unraveling-the-network-landscape:-a-comparative-analytical-approach-to-investigate-protein–protein-interaction-…-–-springer

Unraveling the Network Landscape: A Comparative Analytical Approach to Investigate Protein–Protein Interaction … – Springer

Abstract

Protein–protein interaction (PPI) networks are complex networks that model the interactions between proteins. Various biological processes, such as signal transduction, gene regulation, and metabolism, heavily depend on these interactions. In addition, they are also important targets for drug discovery. Network analysis, a computational approach that characterizes the topological properties of PPI networks, has become a powerful tool for comprehending the organization and function of these networks. These techniques can be applied to PPI networks to gain insights into the functional modules, key proteins, and biological pathways that are involved in these processes. In this paper, two sets of PPI networks – one representing normal cells and the other representing tumor cells – were firstly analyzed using the NetworkX library in Python, followed by their visualization using Matplotlib and Seaborn libraries of Python and Gephi. The networks were constructed from publicly available protein interaction data and network analysis techniques were subsequently used to compare their properties. Additionally, the results may provide insights into the underlying biological processes. To sum up, the analysis in this paper demonstrates the utility of network analysis in understanding the differences between normal and tumor cells at the protein interaction level.

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Authors and Affiliations

  1. Amity Institute of Information Technology, Amity University Kolkata, Rajarhat, India

    Manoswita Bose

  2. Narula Institute of Technology (JIS Group), Agarpara, Kolkata, India

    Neepa Biswas

  3. Supreme Institute of Management and Technology, Hooghly, West Bengal, India

    Dhrubasish Sarkar

Corresponding author

Correspondence to Manoswita Bose .

Editor information

Editors and Affiliations

  1. Department of Computer Science and Engineering, Jalpaiguri Government Engineering College, Jalpaiguri, West Bengal, India

    Dipak Kumar Kole

  2. School of Computing and Electrical Engineering, Indian Institute of Technology Mandi, Mandi, Himachal Pradesh, India

    Shubhajit Roy Chowdhury

  3. Department of Computer Science and Engineering, Jadavpur University, Kolkata, West Bengal, India

    Subhadip Basu

  4. Faculty of Mathematics and Information Science, Warsaw University of Technology, Warsaw, Poland

    Dariusz Plewczynski

  5. Department of Computer Science and Engineering, Jadavpur University, Kolkata, West Bengal, India

    Debotosh Bhattacharjee

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Bose, M., Biswas, N., Sarkar, D. (2024). Unraveling the Network Landscape: A Comparative Analytical Approach to Investigate Protein–Protein Interaction Networks in Normal v/s Tumor Cells. In: Kole, D.K., Roy Chowdhury, S., Basu, S., Plewczynski, D., Bhattacharjee, D. (eds) Proceedings of 4th International Conference on Frontiers in Computing and Systems. COMSYS 2023. Lecture Notes in Networks and Systems, vol 974. Springer, Singapore. https://doi.org/10.1007/978-981-97-2611-0_33

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  • DOI: https://doi.org/10.1007/978-981-97-2611-0_33

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  • Publisher Name: Springer, Singapore

  • Print ISBN: 978-981-97-2610-3

  • Online ISBN: 978-981-97-2611-0

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